Way too complicated!
Ted's description of his factory system is interesting, as I didn't realize that there even was an option for a Y valve and direct overboard discharge.
My system went from the head to the holding tank in the lazarette, then one discharge went to the deck, while the other went back to the head Whale Gusher pump, and then to a through hull. Here in the Great Lakes that isn't a legal set up, so the dealer put a cap on the through hull, and a plug on the end of the hose leading from the pump. Adding a Y valve and direct overboard discharge upstream of all this would be a nice option for offshore, but the number of hoses under the galley sink must be amazing.
I would be interested to see what others think of the gusher pump in the head, as in my case I found that most of the head odor was coming from inside the pump. Even without the pump having an output, the input was still hooked up to a tank discharge, and waste could slosh around and get inside the pump housing. When I remove the pump altogether (by cutting off the discharge hose to the head at two feet and putting a plug in it) my head odor problem was solved.
Which would suggest to me that these things will always be a source of odor, even if you use them regularly.
In Ted's case I think installing my original system would make sense for his situation, but here is a suggestion. See about mounting the gusher pump in the lazarette if you can. That way the odor would be contained to the lazarette (where the holding tank is already) and the hose run inside the head would be all downhill to the through hull, so no waste would would be caught there.
By the way, since we're talking heads and odor, here are a couple of things that worked for me. First we all know that we should replace the hose every few seasons to prevent odor permeation. I wouldn't mind doing that except that on the 38 the only way I could see to replace the hose was to practically dismantle the head and shower compartment. As a stop gap measure I bought some aluminum tape, the type that is sold for duct work. Wrapping that tape around the portion of the hose that was inside the head compartment made quite a difference in the odor, which apparently can't get through the aluminum.
The other suggestion is to use Odorlos head chemical. This stuff really works, as it is essentially sodium nitrate (or maybe nitrite, not sure...) which provides an oxygen source to the waste, which in turn prevents the build up of anearobic (the smelly kind) of bacteria. We were always trying to get our 25 gallon tank to last as long as possible, so we didn't flush the line after each use - which quickly leads to an odor problem in the hose. But if you put a capfull of Odorlos in with each "deposit" there seems to be no odor at all. Amazing stuff.