I think I came up with a solution, all opinions appreciated.
I can't remove the blower taking air from the low point, for that blower does what it's supposed to do removing gasoline fumes and any dangerous gases that settle in the bilge.
And then there's the other hose, which is simply a 4 inch hose from the top side of the engine area exiting on the port stern cowling, an ambient air hose that someone thought somehow would magically suck air from outside in to the engine area, and the blower would then suck out and which has completely failed at it's job.
So the solution which will both suck the air from the bilge, and suck the air from the top of the engine compartment, only needed during the cooling off period after the engine has been turned off, and the water is no longer cooling the engine is, three options I can think of...
a: Add a second blower on the ambient air line to suck the air out of the top of the engine compartment, and only turn it on during the cooling off period after the engine has run.
b: Re-route the ambient air line into the blower line, dividing sucking power, but the most idiot proof.
c: Re-route the ambient hose to the blower, and add a Y valve, so I can choose which hose I want to pull the air from.